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Home » Recipes » Breakfast

Quinoa Egg Muffins ~ A Make-Ahead Breakfast

Amy Casey in the kitchen.
Updated on: Aug 22, 2022 by Amy Casey · This post may contain affiliate links · 34 Comments
Jump to Recipe -
2 quinoa egg muffins stacked on top of each other

Quinoa Egg Muffins. These grab and go savory muffins are perfect for busy mornings. The protein packed muffins are loaded with quinoa, eggs, spinach, onion, bacon, and Gruyere and Parmesan cheese. Make a batch in advance. Breakfast is ready and waiting for you so you have more time to enjoy the day.

2 quinoa egg muffins

My husband and I love to entertain family and friends at our house near the beach. And when we have guests we usually cook and eat and cook and eat and talk about what our next meal will be. But we love spending time with our guests and not stuck in the kitchen preparing breakfast, lunch and dinner. Make ahead recipes are lifesavers for us.

Hearty breakfasts are always on the menu. Blueberry French Toast Croissant Casserole, Hash Brown Crust Ham and Cheddar Quiche, Super Easy Ham and Egg Cups, and Breakfast Sandwiches are just a few early morning entrees I love to make. If the breakfast recipes can be made in advance and just reheated, it's a win for both me and our guests.

Last weekend, my daughter and son-in-law came for a visit. I tried out a new make ahead breakfast recipe for us on Sunday morning. It was a hit!

Jump to:
  • why you'll love quinoa egg muffins
  • ingredients for quinoa egg muffins
  • how to make quinoa egg muffins
  • chef tips for making quinoa egg muffins
  • can quinoa egg muffins be made in advance?
  • just one more thing
  • Recipe

why you'll love quinoa egg muffins

Quinoa Egg Muffins are a wholesome and filling breakfast. Protein packed quinoa and eggs are combined with spinach, onions, bacon, garlic, and robust Gruyere and Parmesan cheeses. The sturdy handheld breakfast can be made in advance and quickly reheated in the microwave. So whenever our guests roll out of bed, breakfast is ready and waiting.

I know a couple of my personal chef clients who will love these savory quinoa breakfast muffins too!

quinoa, eggs, spinach, onion, bacon, cheese

ingredients for quinoa egg muffins

  • quinoa
  • salted butter
  • onion
  • bacon
  • garlic
  • large eggs
  • frozen chopped spinach
  • Gruyere cheese
  • Parmesan cheese
  • Dijon mustard
  • kosher salt
  • pepper
  • cooking spray

how to make quinoa egg muffins

sauteed onion, bacon and garlic
adding cheese to beaten eggs
  • Prep the muffin pan: Preheat the oven and coat a muffin pan with cooking spray.
  • Cook the quinoa: In a small pot over medium heat, add the quinoa and water. Bring to a boil. Then cover to pot and simmer for 15 minutes.
  • Sauté the onion and bacon: Cook the onion and bacon until the onions are soft and browned on the edges and the bacon is crispy. Add the garlic and sauté. Put the onion, bacon, and garlic in a bowl to cool.
  • Mix the muffins: In a large bowl, crack the eggs and whisk until well combined. Add the cooked quinoa, spinach, both cheeses, the sauteed onion, bacon and garlic, Dijon mustard, kosher salt and pepper. Stir to thoroughly combine the ingredients.
  • Fill the muffin pan: Generously fill the muffin cups quinoa and egg muffin mixture.
  • Bake the muffins: Place the muffin pan in the oven and bake the muffins for about 20 minutes.
  • Cool the muffins: Remove the muffin pan from the oven and place on a cooling rack. Let the muffins cool about 5 minutes before removing from the pan.
  • Unmold the muffins: Run a sharp knife around the edge of each muffin and carefully lift out of the pan. Serve immediately or cool slightly and serve at room temperature.
ingredients for quinoa egg muffins
quinoa egg mixture for muffins

chef tips for making quinoa egg muffins

  • Spray the muffin pan: Generously coat each muffin cup and the top of the muffin pan to make removing the quinoa egg muffins a snap.
  • Drain the spinach: After cooking the spinach, thoroughly squeeze out as much of the water as possible. Any extra liquid will make the quinoa egg muffins watery.
  • Fill up those cups: The muffins only puff up a small amount so don't worry about filling the muffin cups too full. This large cookie scoop is ideal for filling the pan.
  • Cool the muffins: Allow the muffins to cool about 5 minutes in the pan for easy removal.
quinoa egg muffins in a muffin pan

can quinoa egg muffins be made in advance?

YES! These quinoa egg muffins are an ideal make ahead recipe. Store cooled muffins in an air tight container (I love these glass storage containers) in the refrigerator for up to 5 days or in the freezer for up to 2 months. To reheat refrigerated or frozen muffins, place in the microwave and heat on 70% power at 30 second intervals until they are heated through.

just one more thing

If you make these tasty quinoa egg muffins, I'd love hearing from you all. Be sure to leave a comment and/or give this recipe a rating ~ I do my best to reply to all your comments. And snap a photo to post to Instagram. I'll add the photos to my Insta stories as I love seeing all your creations.

Also check out my Facebook, YouTube and Pinterest pages for lots of fabulous foodie stories, videos, cooking tips, and recipes.

2 quinoa egg muffins stacked on top of each other

Recipe

a stack of quinoa egg muffins

Quinoa Egg Muffins ~ A Make-Ahead Breakfast

Quinoa Egg Muffins. These grab and go savory muffins are perfect for busy mornings. The protein packed muffins are loaded with quinoa, eggs, spinach, onion, bacon, and Gruyere and Parmesan cheese. Make a batch and breakfast is ready and waiting for you.
5 from 16 votes
Print Pin Rate
Prep Time: 15 minutes minutes
Cook Time: 20 minutes minutes
Total Time: 35 minutes minutes
Servings: 12 servings
Calories: 225kcal
Author: Amy Casey

Equipment

  • chef knife
  • cooling rack
  • glass storage
  • large cookie scoop
  • large sauté pan
  • measuring cups
  • measuring spoons
  • muffin pan
  • stacking glass bowls

Ingredients 

  • cooking spray
  • ¾ cup dry quinoa
  • 1 tablespoon salted butter
  • 1 cup diced onion
  • 4 slices of bacon diced
  • 3 garlic cloves minced
  • 9 large eggs
  • 10 ounces frozen chopped spinach cooked, drained and cooled
  • 1 ½ cups shredded Gruyere cheese
  • ½ cup grated Parmesan cheese
  • 2 teaspoons Dijon mustard
  • 1 teaspoon kosher salt
  • ¼ teaspoon pepper
Prevent your screen from going dark

Instructions

  • Prep the muffin pan: Preheat the oven to 350 degrees F. Generously coat a muffin pan with cooking spray and set aside.
  • Cook the quinoa: In a small pot over medium heat, add the quinoa and 1 ½ cups water. Bring to a boil. Then turn down the heat to low, cover to pot, and simmer for 14 to 15 minutes. All the water should be absorbed and the quinoa fluffy. Place the quinoa in a bowl to cool.
  • Sauté the onion and bacon: In a large sauté pan over medium low heat, add the butter, onion and bacon. Sauté for 6 to 8 minutes. Add the garlic and sauté for about 30 more seconds. Drain off any bacon grease. Put the onion, bacon, and garlic in a bowl to cool.
  • Mix the muffins: In a large bowl, crack the eggs and whisk until well combined. Add the cooked quinoa, spinach, both cheeses, the sauteed onion, bacon and garlic, Dijon mustard, kosher salt and pepper. Stir to thoroughly combine the ingredients.
  • Fill the muffin pan: Generously fill the muffin cups with the quinoa and egg muffin mixture. The muffins only puff up a small amount so don't worry about filling the muffin cups too full. This large cookie scoop is ideal for filling the pan.
  • Bake the muffins: Place the muffin pan in the oven and bake the muffins for 18 to 20 minutes. The muffins are done when the center in firm to the touch.
  • Cool the muffins: Remove the muffin pan from the oven and place on a cooling rack. Let the muffins cool about 5 minutes before removing from the pan.
  • Unmold the muffins: Run a sharp knife around the edge of each muffin and carefully lift out of the pan. Serve immediately or cool slightly and serve at room temperature.

Video

https://dashboard.mediavine.com/videos/rvy0vtjird9vw4tlgovc

Notes

  • Spray the muffin pan: Generously coat each muffin cup and the top of the muffin pan to make removing the quinoa egg muffins a snap.
  • Drain the spinach: After cooking the spinach, thoroughly squeeze out as much of the water as possible. Any extra liquid will make the quinoa egg muffins watery.
  • Fill up those cups: The muffins only puff up a small amount so don't worry about filling the muffin cups too full. This large cookie scoop is ideal for filling the pan.
  • Cool the muffins: Allow the muffins to cool about 5 minutes in the pan for easy removal.
  • Make ahead directions: Store cooled muffins in an air tight container (I love these glass storage containers) in the refrigerator for up to 5 days or in the freezer for up to 2 months. To reheat refrigerated or frozen muffins, place in the microwave and heat on 70% power at 30 second intervals until they are heated through.

Nutrition

Serving: 1muffin | Calories: 225kcal | Carbohydrates: 10g | Protein: 16.5g | Fat: 13.5g | Saturated Fat: 6g | Cholesterol: 168mg | Sodium: 554mg | Fiber: 1.6g | Sugar: 1g
Did you make this recipe?Tag @amycaseycooks on Instagram so we can all admire your work

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Comments

    5 from 16 votes

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    Recipe Rating




  1. Alicia says

    May 30, 2025 at 9:23 am

    5 stars
    If I wanted to sub broccoli for the spinach, do you think it would work? Maybe two cups, chopped? Would love to serve these for some guests that are not fans of spinach.

    Reply
    • Amy Casey says

      May 30, 2025 at 11:20 am

      Yes it would work to sub broccoli for the spinach. I would use 2 cups raw broccoli, cook it and then finely chop it.

      Reply
      • Alicia says

        May 30, 2025 at 4:10 pm

        Many thanks!

        Reply
        • Amy Casey says

          May 31, 2025 at 2:10 pm

          You're so welcome!

          Reply
  2. Alicia says

    May 23, 2025 at 1:33 pm

    5 stars
    Love, love this recipe! I’ve made them without bacon and they are still delish! They are a nice hearty breakfast and everyone that’s tried them loves them as well.

    Reply
    • Amy Casey says

      May 23, 2025 at 2:23 pm

      I'm so glad you enjoy my recipe Alicia! Any recipe that can be made in advance for breakfast is a winner with me too!

      Reply
  3. Andi says

    July 23, 2024 at 3:24 pm

    5 stars
    I love this recipe! It is filling and healthy and is perfect to make ahead for breakfast for the week. It is an easy recipe to follow and you can add other ingredients if you want (I added spinach and it was delicious). 10/10 recommend

    Reply
    • Amy Casey says

      July 24, 2024 at 7:57 am

      I'm so glad you enjoyed my recipe Andi. These muffins are so great to make ahead for quick breakfasts.

      Reply
  4. Timothy Clary says

    June 19, 2023 at 1:38 am

    I made this today. They are awesome. The texture was perfect. I used a bit more quinoa and one extra egg and a generous portion of the onion and bacon and cheese. I had a 1/4 cup plus left over which I placed in a ramekin. Very yummy. I would add a 1/4 teaspoon of salt and about a scant 1/2 tsp of pepper, but that you can always add and it's to taste. Maybe why Amy didn't include it but I didn't notice until I made them that it needed a hint of salt and pepper.

    Reply
  5. Timothy Clary says

    June 16, 2023 at 5:28 pm

    5 stars
    I had everything but bacon and the specific cheeses, but I had on hand a lot of hot breakfast sausage and grated Sharp cheddar cheese and fresh spinach. I included the spinach, opted out of the Dijon and garlic only because of my adjustments but included the onion and chopped up a seeded jalapeno that was just beginning to shrivel just to use it. This was great and a simple alternative with use for hot breakfast sausage. I can't wait to make the original recipe; it sounds awesome and the reason I saved the recipe. I just was not up for a trip to the grocery store.

    Reply
    • Amy Casey says

      June 17, 2023 at 8:56 am

      Your substitutions sound delicious Timothy. I love using recipes as a starting point. I'm all for changing up recipes to suit the ingredients you have on hand.

      Reply
      • Timothy Clary says

        June 19, 2023 at 1:46 am

        5 stars
        Thanks again, I made the original and noted in the review below. This is awesome breakfast food and so easy to make, fridge, freeze. I just had to go back to the grocery to get the rest for your primary recipe. So good! My sister makes the same thing, sorta using frozen hash browns in lieu of the quinoa. I might try that with the sausage and the cheddar cheese. To your point, fun to mix it up.

        Reply
        • Amy Casey says

          June 19, 2023 at 3:08 pm

          I'm so glad you liked my recipe Timothy. I just love having breakfast ready and waiting.

          Reply
  6. Katie Crenshaw says

    June 26, 2022 at 6:03 pm

    5 stars
    These egg muffins turned out delicious and they were very filling. My husband loved them.

    Reply
    • Amy Casey says

      July 09, 2022 at 10:35 am

      I'm so glad you liked my recipe Katie.

      Reply
  7. LaKita says

    June 26, 2022 at 3:42 pm

    5 stars
    Made a batch of these egg muffins over the weekend and they did not last long, everyone enjoyed them. So filling and delicious!

    Reply
    • Amy Casey says

      July 09, 2022 at 10:35 am

      Thanks LaKita!

      Reply
  8. Pete says

    June 26, 2022 at 10:35 am

    5 stars
    Perfect! I am just starting to cook with Quinoa and was looking for an easy and tasty recipe! Everyone loved it!

    Reply
    • Amy Casey says

      July 09, 2022 at 10:36 am

      That's awesome Pete!

      Reply
  9. Lori | The Kitchen Whisperer says

    June 26, 2022 at 4:59 am

    5 stars
    Mmm yum! I make something similar as that’s the only way my hubby will eat quinoa. I’m totally loving your flavor profile!

    Reply
    • Amy Casey says

      July 09, 2022 at 10:36 am

      Thanks Lori! It's a great recipe to add more quinoa to your diet.

      Reply
  10. Chenée says

    June 24, 2022 at 7:51 pm

    5 stars
    I love a grab and go breakfast! These look so delicious, especially the blend of cheeses!

    Reply
    • Amy Casey says

      July 09, 2022 at 10:37 am

      Thanks Chenee!

      Reply
  11. Jacqueline Debono says

    June 24, 2022 at 4:05 am

    5 stars
    I love the idea of these quinoa egg muffins. Like you we often have guests (everybody want to come when you live in Italy!) and we cook and eat and talk about our next meal! These muffins look and sound like the perfect premade breakfast food for family and houseguests. On my to-make list!

    Reply
    • Amy Casey says

      July 09, 2022 at 10:37 am

      Thanks Jacqueline! Oooooh! Visiting Italy would be so much fun!

      Reply
  12. Tracy says

    June 24, 2022 at 1:18 am

    5 stars
    Oh, I love the quinoa in these! So much heartier than a typical egg muffin! So yummy, thanks so much!

    Reply
  13. Kathryn says

    June 23, 2022 at 9:21 am

    5 stars
    These Egg Muffins are the perfect breakfast especially on busy mornings! I love how nutritious they are too. I'll be making another batch this weekend!

    Reply
    • Amy Casey says

      July 09, 2022 at 10:48 am

      They are perfect for busy mornings!

      Reply
  14. Colleen says

    June 21, 2022 at 6:40 pm

    5 stars
    These muffins are so good! A delicious and healthy start to the day. Next time I'll make extra to freeze.

    Reply
    • Amy Casey says

      June 22, 2022 at 5:49 pm

      So glad you enjoyed my recipe Colleen.

      Reply
  15. Jessica says

    June 21, 2022 at 12:49 pm

    5 stars
    I LOVE that these muffins have all the nutrition you could ever need to start your day! We grow quinoa here where we live in Ecuador, and I am always looking for new recipes to use it up. It's an amazing food. And while my kiddo usually won't eat it straight out of the bowl, he DOES eat these for breakfast, sooooo thank you!

    Reply
    • Amy Casey says

      June 22, 2022 at 5:52 pm

      How cool that you grow your own quinoa Jessica!

      Reply
  16. Dennis Littley says

    June 21, 2022 at 10:34 am

    5 stars
    I made these for breakfast and wasn't sure how my family would react. They packed up the leftovers to take with them for snacks later in the day. Thanks for a delicious and easy recipe!!

    Reply
    • Amy Casey says

      June 22, 2022 at 5:52 pm

      I'm so glad your family enjoyed my recipe Dennis.

      Reply
Amy Casey at a cooking demonstration.

I'm Amy Casey and welcome to Amy Casey Cooks! I have a lifelong love of food and 20 years experience as a personal chef while cooking for over 300 clients. I share my tested, tried and true easy recipes, cooking and kitchen tips, and videos so you can make restaurant quality meals in your own kitchen. More about my culinary journey.

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